What is a transition mutation?
A type of point mutation where T changes to C or A changes to G.
What are the three excision repair systems?
Base excision repair, nonhomologous end joining, and homologous recombination.
1/110
p.3
Types of Mutations

What is a transition mutation?

A type of point mutation where T changes to C or A changes to G.

p.1
DNA Repair Mechanisms

What are the three excision repair systems?

Base excision repair, nonhomologous end joining, and homologous recombination.

p.10
Base Excision Repair

Which specialized DNA polymerase is associated with Apurinic lyase?

DNA polymerase β.

p.19
Mismatch Repair

What is the role of the MSH2-MSH6 protein complex?

It binds to a mispaired segment of DNA and distinguishes between the template and the newly synthesized daughter strand.

p.20
Mismatch Repair

What does the DNA-protein complex bind to during mismatch repair?

An endonuclease that cuts the newly synthesized daughter strand.

p.12
Spontaneous DNA Damage

How many depurination events occur per day?

18,000 depurination events.

p.4
Types of Mutations

What are spontaneous point mutations?

Mutations that change a single base or base pair.

p.8
Base Excision Repair

What is the role of DNA glycosylase specific for G·T mismatches?

It flips the thymine base out of the helix and cuts it off the sugar-phosphate DNA backbone.

p.20
Mismatch Repair

What role does DNA helicase play in mismatch repair?

It unwinds the DNA helix.

p.18
Mismatch Repair

In which type of cells does mismatch excision repair occur?

Human cells.

p.1
Cancer and DNA Repair Defects

What is associated with defects in DNA repair?

Cancers.

p.16
Spontaneous DNA Damage

What is the product of the oxidation of guanine (G)?

8-oxoG.

p.24
Nucleotide Excision Repair

Which proteins bind to the unwound DNA during nucleotide excision repair?

XP-G and RPA proteins.

p.25
Nucleotide Excision Repair

What happens to the damaged DNA fragment after it is cut out?

It is degraded to mononucleotides.

p.6
Spontaneous DNA Damage

How many cytosine deamination events occur per day?

100 cytosine deamination events.

p.15
Role of DNA Polymerase in Repair

What is the three-dimensional structure of DNA polymerases compared to?

A half-opened right hand.

p.5
Types of Mutations

What is deamination?

A process that can lead to DNA mutations.

p.9
Base Excision Repair

What is the role of Apurinic endonuclease I (APE1) in DNA repair?

APE1 cuts the DNA backbone at the abasic site.

p.11
Base Excision Repair

What is the function of DNA ligase in base excision repair?

DNA ligase links the inserted base to the backbone.

p.23
Nucleotide Excision Repair

What type of DNA damage does the XP-C protein complex recognize?

Double-helix distortion caused by T-T dimers.

p.22
Nucleotide Excision Repair

What does nucleotide excision repair fix?

DNA regions containing chemically modified bases (chemical adducts) that distort the normal shape of DNA.

p.22
Nucleotide Excision Repair

What causes sensitivity to UV in relation to nucleotide excision repair?

Mutations in any of at least seven different genes, called XP-A through XP-G.

p.24
Nucleotide Excision Repair

What is formed as a result of the action of XP-G and RPA proteins?

A bubble of about 25 bases in the DNA.

p.20
Mismatch Repair

What is the function of the exonuclease in mismatch repair?

It removes several nucleotides from the cut end of the daughter strand, including the mismatched base.

p.11
Base Excision Repair

What type of mismatch is repaired in the described base excision repair process?

A T·G mismatch.

p.12
Spontaneous DNA Damage

What is formed at the apurinic site after depurination?

An apurinic site.

p.7
Base Excision Repair

What do high-fidelity DNA excision-repair systems do?

They recognize and repair damage in DNA.

p.8
Base Excision Repair

What is left after the DNA glycosylase cuts the thymine base from the G·T mismatch?

Just the deoxyribose phosphate.

p.11
Base Excision Repair

What role does DNA Pol β play in base excision repair?

DNA Pol β inserts the single base.

p.24
Nucleotide Excision Repair

What is the role of the XP-C protein complex in nucleotide excision repair?

It recruits the transcription factor TFIIH.

p.2
Cancer and DNA Repair Defects

What can genetic instability lead to?

Increased risk of cancer and other diseases.

p.7
Types of Mutations

What causes a T·G mismatch?

Deamination of C to U or 5-methyl C to T.

p.2
Cancer and DNA Repair Defects

How does genetic instability affect cell behavior?

It can lead to uncontrolled cell growth and tumor formation.

p.25
Nucleotide Excision Repair

What type of DNA repair mechanism is being described?

Nucleotide excision repair.

p.15
Role of DNA Polymerase in Repair

What role does DNA polymerase play in proofreading?

It repairs damage and copying errors.

p.3
Types of Mutations

What is a frameshift mutation?

Mutations caused by insertions or deletions that alter the reading frame of the gene.

p.3
Types of Mutations

What are nonsense mutations?

Mutations that create a premature stop codon in the protein sequence.

p.18
Mismatch Repair

What does the mismatch excision repair pathway correct?

Errors introduced during replication.

p.14
Spontaneous DNA Damage

What is a common cause of spontaneous DNA damage?

Replication errors.

p.14
DNA Repair Mechanisms

How is an incorrect base usually corrected during DNA replication?

By the 3’ to 5’ exonuclease activity (proofreading) of DNA Polymerase.

p.20
Mismatch Repair

What triggers the binding of MLH1 and PMS2 in mismatch repair?

The binding of MSH2 - MSH6.

p.25
Nucleotide Excision Repair

What is the role of XP-F and XP-G in nucleotide excision repair?

They act as endonucleases to cut out the damaged strand.

p.7
Mismatch Repair

What is the purpose of the repair system regarding T·G mismatches?

To remove the mismatched T and replace it with a C.

p.7
Base Excision Repair

What type of repair is used for a T·G mismatch?

Base excision repair.

p.8
Base Excision Repair

What type of mismatch does the DNA glycosylase specifically mentioned repair?

T·G mismatches.

p.17
Exogenous DNA Damage

What is the consequence of pyrimidine dimers on cell replication?

They halt cell replication, potentially leading to cell death.

p.17
Exogenous DNA Damage

What type of bonds are formed between adjacent thymines due to UV irradiation?

C – C bonds, resulting in thymine-thymine dimers.

p.5
Types of Mutations

What are genotoxic chemical byproducts?

Byproducts of metabolism that can cause DNA mutations.

p.26
Nucleotide Excision Repair

How many proteins are involved in the nucleotide excision repair process?

Approximately 30 proteins.

p.1
DNA Sequence Changes

What are the causes of DNA sequence changes?

Copying errors and the effects of various physical and chemical agents.

p.10
Base Excision Repair

What is the role of Apurinic lyase (AP lyase) in DNA repair?

It removes the deoxyribose phosphate.

p.12
Spontaneous DNA Damage

What type of bond is hydrolyzed during depurination?

N-glycosidic bond.

p.24
Nucleotide Excision Repair

What function do the helicase subunits of TFIIH perform?

They partially unwind the double helix using ATP.

p.13
Spontaneous DNA Damage

What type of DNA damage can lead to deletions?

Spontaneous DNA damage.

p.16
Types of Mutations

What type of mutations are transversions?

Mutations where T <-> G/A and A <-> C/T.

p.22
Nucleotide Excision Repair

How many different XP genes are associated with nucleotide excision repair?

At least seven different genes (XP-A through XP-G).

p.5
Types of Mutations

What can cause DNA mutations?

DNA damage, which is a change in the normal DNA sequence.

p.15
Role of DNA Polymerase in Repair

What happens when an incorrect base is added at the 3ʹ end?

It causes melting of the newly formed end and polymerase pausing.

p.5
Types of Mutations

What are exogenous causes of mutations?

External factors like carcinogens and radiation.

p.9
Base Excision Repair

What type of mismatch does base excision repair address in the context provided?

A T·G mismatch.

p.23
Nucleotide Excision Repair

What is the role of the XP-C protein complex?

It recognizes double-helix distortion, such as that caused by a T-T dimer.

p.23
Nucleotide Excision Repair

What is the mechanism involved in repairing T-T dimers in human cells?

Nucleotide excision repair.

p.19
Mismatch Repair

What is unclear about strand distinction in eukaryotes?

It is unclear how the MSH2-MSH6 complex distinguishes between strands, possibly related to the status of the 3’ end of the daughter strand.

p.4
Types of Mutations

What is a missense mutation?

A point mutation that changes the protein amino acid sequence.

p.16
Spontaneous DNA Damage

What is a common cause of spontaneous DNA damage mentioned?

Oxidation.

p.6
Types of Mutations

What type of mutations does deamination lead to?

Point mutations.

p.15
Role of DNA Polymerase in Repair

What part of DNA polymerase binds the single-stranded segment of the template strand?

The 'fingers'.

p.5
Types of Mutations

What is depurination?

A type of DNA damage that can result in mutations.

p.26
Nucleotide Excision Repair

What fills the gap during nucleotide excision repair?

DNA polymerase.

p.14
Spontaneous DNA Damage

What happens when an incorrect base is added during DNA replication?

It affects base pairing during the next round of DNA replication.

p.2
Cancer and DNA Repair Defects

What is genetic instability?

A condition where the genetic information of a cell is prone to mutations and alterations.

p.12
Spontaneous DNA Damage

Which bases are primarily affected by depurination?

Adenine and guanine.

p.16
Spontaneous DNA Damage

Which base can 8-oxoG base pair with?

Adenine (A).

p.22
Nucleotide Excision Repair

What is the role of the XP genes in nucleotide excision repair?

They are components of the nucleotide excision-repair system that, when mutated, cause sensitivity to UV.

p.17
Exogenous DNA Damage

What often happens to dimers involving Cytosine?

They often lead to deamination.

p.3
Types of Mutations

What are synonymous mutations?

Mutations that do not change the amino acid sequence of a protein.

p.21
Mismatch Repair

What type of repair mechanism is involved in correcting mismatches in DNA?

Mismatch excision repair.

p.10
Base Excision Repair

What type of mismatch does base excision repair address in this context?

A T·G mismatch.

p.19
Mismatch Repair

How does the MSH2-MSH6 complex distinguish between the template and daughter strand in prokaryotes?

The daughter strand is transiently uniquely methylated.

p.4
Types of Mutations

What is a nonsense mutation?

A point mutation that introduces a stop codon.

p.13
Spontaneous DNA Damage

What is a specific example of spontaneous DNA damage?

Depurination.

p.6
Types of Mutations

What happens if deaminated cytosine (C) is not restored?

The normal C·G base pair will become a T·A mutation during replication.

p.17
Exogenous DNA Damage

Which type of dimers usually get corrected?

T - T dimers.

p.3
Types of Mutations

What is the difference between coding and non-coding regions of the genome?

Coding regions contain sequences that are translated into proteins, while non-coding regions do not.

p.5
Types of Mutations

What can lead to copy errors in DNA?

Mistakes during DNA replication.

p.26
Cancer and DNA Repair Defects

What environmental factor increases cancer risk in individuals with xeroderma pigmentosum?

UV rays from sunlight.

p.2
DNA Repair Mechanisms

What are common causes of genetic instability?

Errors in DNA replication, damage from environmental factors, and defects in DNA repair mechanisms.

p.6
Types of Mutations

What is a frequent cause of point mutations?

Deamination of 5-Methylcytosine (C) to thymine (T).

p.8
Base Excision Repair

Are there other types of glycosylases?

Yes, other glycosylases are specific for different base modifications.

p.17
Exogenous DNA Damage

What effect do pyrimidine dimers have on the DNA helix?

They generate a kink in the helix.

p.5
Types of Mutations

What is one endogenous cause of mutations?

Spontaneous cleavage of bonds.

p.21
Role of DNA Polymerase in Repair

What is the function of DNA ligase in DNA repair?

It connects the new section of DNA to the backbone.

p.26
Nucleotide Excision Repair

What enzyme seals the remaining nick after DNA polymerase fills the gap?

DNA ligase.

p.25
Nucleotide Excision Repair

How far apart do XP-F and XP-G cut the damaged strand?

24 – 32 bases apart on each side of the lesion.

p.2
DNA Repair Mechanisms

What role do DNA repair mechanisms play in genetic stability?

They correct errors in DNA to maintain genetic integrity.

p.3
Types of Mutations

What are point mutations?

Mutations that involve a change in a single nucleotide.

p.15
Role of DNA Polymerase in Repair

Where does the polymerase catalytic activity lie?

In the junction between the fingers and the palm.

p.15
Role of DNA Polymerase in Repair

What happens to the 3ʹ end after the mispaired base is removed?

It flips back into the polymerase site and elongation resumes.

p.26
Cancer and DNA Repair Defects

What hereditary disease is associated with defects in DNA repair?

Xeroderma pigmentosum.

p.4
Types of Mutations

What is a silent mutation?

A point mutation that may not change the amino acid sequence, often occurring in the third codon position.

p.4
Types of Mutations

How can a gene regulatory region point mutation affect a gene?

It can change gene expression.

p.17
Exogenous DNA Damage

What type of DNA damage is caused by UV radiation?

Pyrimidine dimers.

p.3
Types of Mutations

What are transversion mutations?

Point mutations where T changes to G/A, A changes to C/T, or C changes to A/G, and G changes to C/T.

p.15
Role of DNA Polymerase in Repair

What occurs at the 3ʹ → 5ʹ exonuclease site?

The mispaired base and probably other bases are removed.

p.5
Types of Mutations

What role do carcinogens play in mutations?

They are substances that can cause DNA mutations.

p.21
Role of DNA Polymerase in Repair

What role does DNA polymerase (Pol δ) play in DNA repair?

It fills the gap in the DNA strand.

p.21
Cancer and DNA Repair Defects

What mutations predispose individuals to nonpolyposis colorectal cancer?

Inheritable loss-of-function mutations in MSH2 or MLH1.

p.3
Types of Mutations

What are missense mutations?

Mutations that result in a change in one amino acid in the protein sequence.

p.5
Types of Mutations

How do ultraviolet and ionizing radiation contribute to mutations?

They can cause DNA damage leading to mutations.

p.26
Cancer and DNA Repair Defects

What types of skin cancers are individuals with xeroderma pigmentosum prone to develop?

Melanomas and squamous cell carcinomas.

Study Smarter, Not Harder
Study Smarter, Not Harder