How many carbon atoms does Ribose have?
5 carbon atoms.
What is non-competitive inhibition?
The hindrance of an enzyme by binding to an allosteric site, changing the shape of the active site to prevent substrate binding.
1/298
p.1
Nucleic Acids: DNA and RNA

How many carbon atoms does Ribose have?

5 carbon atoms.

p.35
Inhibition of Enzymes

What is non-competitive inhibition?

The hindrance of an enzyme by binding to an allosteric site, changing the shape of the active site to prevent substrate binding.

p.8
Nucleic Acids: DNA and RNA

What is RNA?

Ribonucleic acid, a single strand of nucleotides.

p.38
Transcription and Translation Processes

What are primers?

Short single-stranded chains of nucleotides that are complementary to the template strand.

p.26
Functions of Proteins

What is an anabolic reaction?

A reaction where two or more smaller molecules combine to form a larger one, gaining energy.

p.25
Enzyme Function and Mechanism

What is a substrate in the context of enzymes?

The reactant undergoing an enzyme-facilitated reaction.

p.19
Gene Expression and Regulation

What are the structural genes in the trp operon?

trpE, trpD, trpC, trpB, and trpA.

p.32
Inhibition of Enzymes

How do most irreversible inhibitors interact with enzymes?

They usually occupy the active site of an enzyme and are classified as competitive inhibitors.

p.8
Nucleic Acids: DNA and RNA

What is a key characteristic of RNA's structure?

RNA is single stranded.

p.7
Nucleic Acids: DNA and RNA

What macromolecules are included in the class of nucleic acids?

DNA and RNA.

p.26
Enzyme Function and Mechanism

How do enzymes work in biochemical pathways?

Enzymes frequently team up to catalyze reactions continuously.

p.12
Gene Expression and Regulation

What is the leader region in eukaryotic gene expression?

The section of DNA just upstream of the coding region and downstream of the promoter and operator.

p.15
Gene Expression and Regulation

What is alternative splicing?

The process where different exons may be spliced, resulting in a single gene producing multiple different mRNA strands.

p.15
Gene Expression and Regulation

What does alternative splicing allow for?

It allows a single gene to give rise to many different mRNA strands and code for many different proteins.

p.38
Transcription and Translation Processes

In which direction do polymerases synthesize a complementary strand?

In a 5' to 3' direction.

p.26
Functions of Proteins

What is a catabolic reaction?

A reaction where a larger molecule breaks down into two or more smaller molecules, losing energy.

p.25
Enzyme Function and Mechanism

What is the active site of an enzyme?

The pocket-like area where the substrate binds.

p.26
Enzyme Function and Mechanism

How do enzymes lower activation energy?

By bringing reactants closer to the state they need to be in to react.

p.19
Gene Expression and Regulation

What controls the entire trp operon?

A regulatory gene located upstream.

p.26
Enzyme Function and Mechanism

What is a biochemical pathway?

A series of reactions where one enzyme catalyzes a substrate into a product.

p.12
Gene Expression and Regulation

What role does the leader region play in gene expression?

It plays a critical role in regulating gene expression in prokaryotes.

p.6
Protein Structure Levels

What type of bonds can form between cysteine amino acids?

Disulphide bonds.

p.3
Functions of Proteins

What is the function of peptide hormones?

They are chemical messengers used to communicate and induce changes in cells.

p.17
Transcription and Translation Processes

What is transcription?

The process whereby a sequence of DNA is used as a template to produce a complementary sequence of mRNA.

p.9
Nucleic Acids: DNA and RNA

What are the components of nucleic acids?

A phosphate group, a five-carbon sugar, and a nitrogenous base.

p.8
Nucleic Acids: DNA and RNA

How does the structure of RNA differ from DNA?

RNA contains ribose sugar instead of deoxyribose and uses uracil instead of thymine.

p.22
Gene Expression and Regulation

What is an operon?

A cluster of linked genes that share a common promoter and operator and are transcribed at the same time.

p.10
Transcription and Translation Processes

What is transcription?

The process where a sequence of DNA is used as a template to produce a complementary sequence of mRNA.

p.26
Enzyme Function and Mechanism

What is required for molecules to overcome activation energy according to collision theory?

Molecules need to collide with enough kinetic energy.

p.9
Nucleic Acids: DNA and RNA

What are the two types of nucleic acids?

Deoxyribonucleic acid (DNA) and ribonucleic acid (RNA).

p.19
Gene Expression and Regulation

What does the trp operon regulate?

The expression of structural genes coding for proteins involved in the production of the amino acid tryptophan.

p.14
Gene Expression and Regulation

What is splicing?

The process of cutting out introns and joining exons in pre-mRNA.

p.3
Functions of Proteins

What is the role of receptors in the body?

They receive signals from the environment.

p.7
Nucleic Acids: DNA and RNA

What are nucleic acids made of?

Polymers of nucleotide monomers.

p.3
Functions of Proteins

What are examples of receptors?

Acetylcholine receptors and hormone receptors.

p.37
DNA Manipulation Enzymes

What are overhanging nucleotides?

Unbonded nucleotides on the ends of the DNA strand resulting from a staggered cut.

p.16
Transcription and Translation Processes

What are the three stages of translation?

Initiation, elongation, and termination.

p.10
Gene Expression and Regulation

What is the role of the genetic code in protein synthesis?

It provides the rules for how genetic information is transcribed and translated into functional proteins.

p.25
Enzyme Function and Mechanism

What is the primary function of enzymes?

To speed up biochemical reactions by lowering activation energy.

p.15
Transcription and Translation Processes

What is the role of translation in gene expression?

It involves reading and converting the information in the mRNA molecule into a polypeptide chain.

p.30
Enzyme Function and Mechanism

What happens to the reaction rate when enzyme concentration remains constant and substrate concentration increases?

The reaction rate will increase.

p.33
Enzyme Function and Mechanism

What are self-regulating pathways?

Pathways where the amount of product is controlled by one enzyme within the pathway.

p.10
Gene Expression and Regulation

How does the genetic code group nucleotides?

Into groups of three.

p.37
DNA Manipulation Enzymes

What is a blunt end in DNA manipulation?

The result of a straight cut across double-stranded DNA by an endonuclease, resulting in no overhanging nucleotides.

p.27
Enzyme Function and Mechanism

What is a biochemical pathway?

A series of enzyme-catalyzed biochemical reactions where the product of one reaction becomes the substrate of the next.

p.30
Enzyme Function and Mechanism

Before reaching saturation, what role does substrate concentration play in the reaction?

It acts as a limiting factor or limiting reagent.

p.25
Enzyme Function and Mechanism

What happens to the active site upon substrate binding?

It undergoes a conformational change.

p.13
Transcription and Translation Processes

Where does transcription occur in eukaryotes?

Entirely within the nucleus.

p.25
Enzyme Function and Mechanism

What is a conformational change?

A change in the 3D shape of macromolecules such as proteins.

p.38
Transcription and Translation Processes

What is the primary function of DNA polymerase?

Replication or amplification of DNA.

p.10
Transcription and Translation Processes

What is translation?

The process where an mRNA sequence is read to produce a corresponding amino acid sequence to build a polypeptide.

p.6
Protein Structure Levels

What is the Quaternary structure of a protein?

Formed when 2 or more polypeptide chains with tertiary structure join together.

p.17
Transcription and Translation Processes

What is precursor messenger RNA (pre-mRNA)?

The immediate product of transcription of a DNA sequence that requires modifications before translation.

p.13
Gene Expression and Regulation

What is gene expression?

The production of functional gene products such as proteins or non-coding strands of RNA.

p.2
Amino Acids and Proteins

What are proteins also known as?

Polypeptides.

p.4
Functions of Proteins

What is a peptide hormone?

A protein signaling molecule that regulates physiological behavior.

p.28
Factors Affecting Enzyme Activity

How does temperature affect enzyme activity?

Enzyme activity is affected by temperature; too much heat can cause denaturation and stop functioning.

p.4
Functions of Proteins

What is an antibody?

A protein produced by plasma cells during immune response that is specific to an antigen and combats pathogens.

p.32
Inhibition of Enzymes

What effect does an inhibitor have on a connected series of enzyme-catalyzed reactions?

It can disrupt the pathway by non-competitively and reversibly inhibiting an enzyme, halting its function.

p.4
Amino Acids and Proteins

What are amino acids known as?

Monomers.

p.24
N/A

What is the significance of Chapter 2 Page 24?

The content of this page is not provided, so specific details cannot be summarized.

p.14
Gene Expression and Regulation

What is RNA processing?

The modification of pre-mRNA into mRNA for translation.

p.6
Protein Structure Levels

What stabilizes the 3D structure of proteins?

Disulphide bonds between cysteine amino acids.

p.3
Functions of Proteins

What does insulin regulate?

Blood sugar levels.

p.20
Transcription and Translation Processes

What is the outcome of the formation of the terminator hairpin loop?

Transcription of structural genes necessary for tryptophan synthesis is prevented.

p.30
Enzyme Function and Mechanism

What is the saturation point in enzyme-substrate interactions?

It occurs when all enzyme active sites are continuously occupied by substrate molecules.

p.15
Transcription and Translation Processes

What is formed during the translation of mature mRNA?

A sequence of amino acids, ultimately forming a polypeptide chain.

p.11
Gene Expression and Regulation

What does the start codon (AUG) code for?

The amino acid methionine.

p.14
Gene Expression and Regulation

What is a spliceosome?

The enzyme that removes introns and joins exons during RNA processing.

p.34
Functions of Proteins

What are the primary roles of ATP and ADP in cellular processes?

They are essential coenzymes in cellular energy transfer.

p.28
Factors Affecting Enzyme Activity

What happens to chemical reactions as body temperature increases?

Chemical reactions speed up due to greater kinetic energy of molecules.

p.34
Functions of Proteins

What happens to ATP during energy transfer?

ATP loses a phosphate group and becomes ADP.

p.38
Transcription and Translation Processes

What is the primary function of RNA polymerase?

Transcription of genes.

p.14
Gene Expression and Regulation

What is the function of the 5’ methyl-G cap?

It stabilizes the mRNA molecule and prevents degradation.

p.25
Enzyme Function and Mechanism

What are enzymes made of?

Organic (carbon-based) molecules.

p.6
Protein Structure Levels

What is a prosthetic group?

A non-protein group bound to a protein, such as a vitamin or ion.

p.33
Enzyme Function and Mechanism

What happens when Enzyme 1 is inhibited?

It may lead to an accumulation of Substrate 1, necessitating the recommencement of the pathway.

p.1
Gene Expression and Regulation

What is the relationship between codons and amino acids?

Different codons (3 bases) correspond to different amino acids.

p.17
Transcription and Translation Processes

What is translation?

The process where an mRNA sequence is read to produce a corresponding amino acid sequence to build a polypeptide.

p.1
Nucleic Acids: DNA and RNA

What are the two types of sugars found in nucleic acids?

Deoxyribose (DNA) and Ribose (RNA).

p.33
Enzyme Function and Mechanism

What is the function of coenzymes?

They assist enzymes in catalyzing reactions.

p.31
Inhibition of Enzymes

What happens when an inhibitor binds to an enzyme?

The enzyme can no longer catalyze its specific reaction or its function is greatly reduced.

p.9
Nucleic Acids: DNA and RNA

What is the primary function of nucleic acids?

To carry genetic information and synthesize proteins.

p.30
Enzyme Function and Mechanism

How does enzyme concentration affect the reaction rate?

Higher enzyme concentrations lead to higher reaction rates due to more available active sites.

p.2
Functions of Proteins

What does amylase do?

Breaks down starch into maltose.

p.35
Inhibition of Enzymes

What is an allosteric site?

A region on an enzyme that is not the active site.

p.26
Enzyme Function and Mechanism

What is activation energy?

The initial amount of energy required for a chemical reaction.

p.14
Gene Expression and Regulation

What is the purpose of the 3’ poly-A tail?

It stabilizes mRNA and allows binding to ribosomes during translation.

p.20
Transcription and Translation Processes

What happens when tryptophan is incorporated into the protein?

It causes specific folding of the mRNA via hydrogen bonds, forming a terminator hairpin loop.

p.8
Protein Structure Levels

What is the function of ribosomal RNA (rRNA)?

Serves as the main structural component of ribosomes within cells.

p.32
Inhibition of Enzymes

What happens in irreversible inhibition?

Inhibitors form strong, unbreakable bonds with enzymes, preventing them from binding with substrates or catalyzing reactions indefinitely.

p.20
Transcription and Translation Processes

What occurs in low tryptophan conditions when the ribosome reaches the attenuator sequence?

The ribosome pauses due to the absence of tRNA-bound tryptophan.

p.23
Transcription and Translation Processes

What type of transport is exocytosis?

A form of bulk transport and active transport.

p.25
Enzyme Function and Mechanism

What forms when an enzyme binds to its substrate?

An enzyme-substrate complex.

p.32
Functions of Proteins

Why are enzyme inhibitors important in biochemical pathways?

They regulate the production of specific products based on the body's requirements.

p.3
Functions of Proteins

What is the function of antibodies?

They are involved in the immune system by recognizing and destroying pathogens.

p.23
Transcription and Translation Processes

What are the stages of exocytosis?

1. Vesicle is transported to the plasma membrane. 2. Vesicle membrane fuses with plasma membrane. 3. Secretory products are released into the extracellular environment.

p.27
Enzyme Function and Mechanism

What role do enzymes play in biochemical reactions?

They act as organic catalysts that lower the activation energy of reactions.

p.17
Transcription and Translation Processes

What is ribosomal RNA (rRNA)?

RNA that is a key structural component of ribosomes, which assemble proteins.

p.22
Gene Expression and Regulation

What do operons share in common?

A common promoter and operator.

p.35
Inhibition of Enzymes

How does non-competitive inhibition affect the active site of an enzyme?

It changes the shape of the active site, preventing substrate binding.

p.22
Gene Expression and Regulation

How are genes within an operon transcribed?

At the same time.

p.38
Transcription and Translation Processes

What do polymerases require to attach to the start of a template strand of DNA?

A primer.

p.20
Transcription and Translation Processes

What begins simultaneously in the trp operon?

Transcription and translation.

p.8
Gene Expression and Regulation

What is the function of messenger RNA (mRNA)?

Carries genetic information from the nucleus to the ribosomes for protein synthesis.

p.20
Transcription and Translation Processes

What does the attenuator sequence code for?

Two tryptophan amino acids.

p.8
Transcription and Translation Processes

What role does transfer RNA (tRNA) play in protein synthesis?

Delivers specific amino acids to the ribosome after recognizing specific nucleotide sequences on mRNA.

p.10
Nucleic Acids: DNA and RNA

What is a triplet in DNA?

A sequence of three nucleotides coding for one amino acid.

p.14
Gene Expression and Regulation

What are introns?

Non-coding regions of DNA that do not code for proteins.

p.3
Functions of Proteins

What effect does adrenaline have on the body?

Increases heart rate and expands airways.

p.10
Nucleic Acids: DNA and RNA

What is a codon in mRNA?

A sequence of three nucleotides coding for one amino acid.

p.15
Transcription and Translation Processes

What happens to pre-mRNA after post-transcriptional modifications?

It exits the nucleus through a nuclear pore and travels to a ribosome in the cytosol or attached to the rough endoplasmic reticulum.

p.23
Transcription and Translation Processes

What is exocytosis?

The process by which contents of a vesicle are released from a cell.

p.1
Amino Acids and Proteins

What are the building blocks of proteins?

20 amino acids.

p.6
Protein Structure Levels

Do all proteins have a Quaternary structure?

No, not all proteins will have a Quaternary structure.

p.37
DNA Manipulation Enzymes

What is a sticky end in DNA manipulation?

The result of a staggered cut through double-stranded DNA by an endonuclease, resulting in overhanging nucleotides.

p.9
Nucleic Acids: DNA and RNA

What is one key difference between DNA and RNA?

The type of sugar molecule present.

p.13
Gene Expression and Regulation

What are the main stages of gene expression?

Transcription, RNA processing, and Translation.

p.2
Functions of Proteins

What is the proteome?

All the proteins that are expressed by a cell or organism at a given time.

p.11
Gene Expression and Regulation

What do stop codons (UAA, UAG, UGA) signal?

The termination of translation.

p.9
Nucleic Acids: DNA and RNA

How do DNA and RNA differ in terms of structure?

DNA forms double strands, while RNA forms single strands.

p.30
Factors Affecting Enzyme Activity

What factors become limiting after saturation is reached?

Temperature, pH, or enzyme concentration.

p.2
Functions of Proteins

What is an example of an enzyme that breaks down hydrogen peroxide?

Catalase.

p.11
Gene Expression and Regulation

What is a stop codon?

A sequence of three nucleotides in mRNA that signals the end of translation.

p.37
DNA Manipulation Enzymes

What do polymerases do?

Polymerases add nucleotides to DNA or RNA, leading to the copying of entire genes.

p.11
Gene Structure

What are the key components of gene structure?

Promoter region, introns, exons, termination sequences, and operator regions.

p.2
Functions of Proteins

What is the role of RNA polymerase?

Catalyzes the formation of mRNA from DNA.

p.13
Transcription and Translation Processes

What occurs during the elongation stage of transcription?

RNA polymerase moves along the DNA template, adding complementary RNA nucleotides to form pre-mRNA.

p.28
Factors Affecting Enzyme Activity

What is denaturation in the context of enzymes?

The breakdown of bonds that create tertiary and quaternary structures, causing loss of function.

p.1
Protein Structure Levels

What defines the tertiary structure of a protein?

The 3D structure of the protein.

p.18
Gene Expression and Regulation

What is an operon?

A group of multiple structural genes controlled by a single promoter and operator.

p.1
Protein Structure Levels

What is the quaternary structure of a protein?

The arrangement of multiple polypeptide chains.

p.18
Gene Expression and Regulation

What happens when the operator region is not bound by a repressor protein?

RNA polymerase can move downstream, allowing for transcription of the gene.

p.29
Factors Affecting Enzyme Activity

What shape does the plot of enzyme activity against pH typically take?

A symmetrical, bell-shaped curve.

p.17
Transcription and Translation Processes

What is the role of messenger RNA (mRNA)?

To carry genetic information from the nucleus to the ribosomes.

p.30
Enzyme Function and Mechanism

What happens to the reaction rate after reaching the saturation point?

The reaction rate remains constant, resulting in a plateau.

p.9
Nucleic Acids: DNA and RNA

What is another difference between DNA and RNA?

The nitrogenous bases present.

p.13
Transcription and Translation Processes

What occurs during transcription?

DNA is copied into pre-mRNA.

p.2
Functions of Proteins

What is the primary function of enzymes?

To speed up chemical reactions by reducing activation energy.

p.11
Gene Expression and Regulation

What is a start codon?

A sequence of three nucleotides in mRNA that signals the start of translation.

p.28
Factors Affecting Enzyme Activity

What is the optimal temperature range for enzymes in the human body?

36 - 38°C.

p.34
Functions of Proteins

How is ADP converted back to ATP?

Through a process called phosphorylation, where a phosphate group is added.

p.28
Factors Affecting Enzyme Activity

What is meant by 'optimal temperature' for an enzyme?

The point at which the maximum function of an enzyme occurs.

p.5
Protein Structure Levels

What is a condensation reaction?

A reaction where two monomers join to form a larger molecule, producing water as a by-product.

p.1
Protein Structure Levels

What characterizes the primary structure of a protein?

The chain of amino acids.

p.18
Gene Expression and Regulation

What is the function of repressor proteins?

They inhibit or decrease the expression of structural genes.

p.7
Nucleic Acids: DNA and RNA

What does 'antiparallel' mean in the context of DNA?

Each strand runs in opposite directions; one runs 3' to 5' and the other runs 5' to 3'.

p.28
Factors Affecting Enzyme Activity

Can enzymes regain functionality after being cooled?

Yes, enzymes can regain functionality when reheated as significant denaturation does not occur at low temperatures.

p.2
Functions of Proteins

What is keratin?

A tough protein found in skin, hair, and nails.

p.28
Factors Affecting Enzyme Activity

What happens to enzymes outside their tolerance range?

They become inactive.

p.18
Gene Expression and Regulation

What is the function of the trp operon?

It is involved in the production of the amino acid tryptophan, which is used in protein production.

p.36
DNA Manipulation Enzymes

What are the two types of ends created by endonucleases?

Sticky ends and blunt ends.

p.36
DNA Manipulation Enzymes

What happens when sticky end endonucleases cut DNA?

They create a staggered cut with overhanging, unpaired nucleotides.

p.14
Gene Expression and Regulation

What are exons?

Regions of DNA that code for proteins and are retained during RNA processing.

p.20
Transcription and Translation Processes

What does the RNA polymerase do in low tryptophan conditions?

It continues along the DNA template.

p.23
Transcription and Translation Processes

What is required for active transport?

An energy input.

p.19
Gene Expression and Regulation

When is the transcription of trp structural genes stopped?

When high levels of tryptophan are present.

p.37
DNA Manipulation Enzymes

What is the function of ligases?

Ligases are enzymes that join two fragments of DNA or RNA together by catalyzing the formation of phosphodiester bonds.

p.20
Gene Expression and Regulation

What is the effect of high tryptophan levels on tryptophan synthesis?

It inhibits tryptophan synthesis, conserving energy for the cell.

p.23
Transcription and Translation Processes

How does the fluid nature of the plasma membrane facilitate exocytosis?

It enables the membrane to fuse with vesicles.

p.3
Functions of Proteins

What is the function of ferritin?

Storage of iron.

p.31
Inhibition of Enzymes

What is the difference between reversible and irreversible inhibitors?

Reversible inhibitors bind weakly and can be removed, while irreversible inhibitors form strong bonds that cannot be broken.

p.37
DNA Manipulation Enzymes

What is a primer in DNA synthesis?

A short, single strand of nucleic acids that acts as a starting point for polymerase enzymes to attach.

p.34
Functions of Proteins

How often do ATP molecules undergo coenzyme cycling?

Over 1,000 times daily.

p.11
Gene Expression and Regulation

What is the common promoter sequence in eukaryotes?

'TATAAA', known as the TATA box.

p.31
Inhibition of Enzymes

What effect do reversible inhibitors have on enzyme-catalyzed reactions?

They slow down the reactions but do not permanently stop them.

p.34
Inhibition of Enzymes

What is the difference between reversible and irreversible inhibitors?

Reversible inhibitors bind weakly and impair temporarily, while irreversible inhibitors bind strongly and impair permanently.

p.21
Gene Expression and Regulation

What is gene regulation?

The control of gene expression, typically by switching transcription on or off.

p.11
Gene Expression and Regulation

What is the role of the operator region?

It serves as the binding site for repressor proteins to inhibit gene expression.

p.29
Factors Affecting Enzyme Activity

What is the optimal pH for pancreatic lipase?

Optimal pH of 8.

p.36
DNA Manipulation Enzymes

What is the advantage of sticky end endonucleases?

They ensure that an inserted gene is oriented correctly when manipulating DNA.

p.31
Inhibition of Enzymes

What are competitive inhibitors?

Molecules that block an enzyme's active site, preventing substrate binding.

p.33
Enzyme Function and Mechanism

What role do enzyme inhibitors play in cells?

They maintain cellular homeostasis by regulating biochemical pathways.

p.31
Inhibition of Enzymes

How do non-competitive inhibitors affect enzymes?

They bind to a site other than the active site, causing a conformational change that prevents substrate binding.

p.27
Enzyme Function and Mechanism

What is another term for a biochemical pathway?

Metabolic pathway.

p.18
Gene Expression and Regulation

What do regulatory genes code for?

Proteins that influence the expression of structural genes.

p.19
Gene Expression and Regulation

What happens when tryptophan levels are low?

Transcription of the trp structural genes is started to increase tryptophan availability.

p.1
Amino Acids and Proteins

What is a polypeptide?

A chain of amino acids linked together.

p.19
Gene Expression and Regulation

What is the role of the repressor protein in the trp operon?

It binds to the operator region to block RNA polymerase when tryptophan levels are high.

p.23
Functions of Proteins

What organelles are primarily involved in the protein secretory pathway?

Ribosomes, rough endoplasmic reticulum, Golgi apparatus, and transport and secretory vesicles.

p.3
Enzyme Function and Mechanism

What is an enzyme?

An organic molecule, typically a protein, that catalyzes specific reactions.

p.31
Inhibition of Enzymes

How can reversible competitive inhibition be overcome?

By increasing substrate concentration, which increases the chances of substrate binding to the enzyme.

p.34
Inhibition of Enzymes

What are competitive inhibitors?

Substances that block an enzyme’s active site.

p.21
Gene Expression and Regulation

What is the outcome of transcription and translation in low tryptophan conditions?

Increased tryptophan production is facilitated.

p.29
Factors Affecting Enzyme Activity

What happens to enzyme activity as temperature rises towards the optimal temperature?

Kinetic energy increases, leading to more enzyme-substrate complexes.

p.5
Protein Structure Levels

What is the tertiary structure of a protein?

The functional 3D shape of a protein formed by further folding of secondary structures.

p.34
Factors Affecting Enzyme Activity

What can cause enzymes to be denatured?

Extreme conditions such as high temperatures or extreme pH levels.

p.5
Protein Structure Levels

What is the quaternary structure of a protein?

The bonding of multiple polypeptide chains together.

p.29
Factors Affecting Enzyme Activity

What is the pH range for pepsin, the main digestive enzyme in the human stomach?

Optimal pH around 1.5 – 2.

p.36
DNA Manipulation Enzymes

How do blunt end endonucleases cut DNA?

They cut in the middle of the recognition site, resulting in a straight cut with no overhanging nucleotides.

p.20
Transcription and Translation Processes

What forms to prevent termination of transcription in low tryptophan conditions?

An antiterminator hairpin loop.

p.7
Nucleic Acids: DNA and RNA

What are the three components of a nucleotide?

A phosphate group, a five-carbon sugar, and a nitrogen-containing base.

p.5
Protein Structure Levels

What is a monomer?

A molecule that is the smallest building block of a polymer.

p.18
Gene Expression and Regulation

What is the role of structural genes?

They produce proteins involved in the structure or function of a cell, such as enzymes and transport proteins.

p.13
Transcription and Translation Processes

What are the three main stages of transcription?

Initiation, elongation, and termination.

p.7
Nucleic Acids: DNA and RNA

What does the 3' carbon of a nucleotide attach to?

The phosphate of the following nucleotide.

p.19
Gene Expression and Regulation

What is attenuation in the context of the trp operon?

A process where transcription begins but is stopped early before proteins are made, in response to tRNA-bound tryptophan.

p.23
Transcription and Translation Processes

What is the role of bulk transport?

To move large molecules or groups of molecules into or out of the cell.

p.19
Gene Expression and Regulation

Where is the attenuator sequence located in the trp operon?

At the end of the leader region of the trp operon.

p.30
Enzyme Function and Mechanism

In biological systems, how does enzyme concentration typically compare to substrate concentration?

Enzyme concentrations are usually lower than substrate concentrations.

p.13
Transcription and Translation Processes

What happens to pre-mRNA after transcription?

It is processed into mRNA, which carries the message for protein synthesis.

p.7
Nucleic Acids: DNA and RNA

How are the two polynucleotide chains in DNA joined?

By complementary base pairs.

p.16
Functions of Proteins

What can happen to fully functional proteins after modification?

They can remain in the cell for use or be exported out of the cell via exocytosis.

p.29
Factors Affecting Enzyme Activity

What is the effect of high temperatures on enzyme activity?

Enzyme activity sharply declines until denaturation causes complete loss of function.

p.21
Gene Expression and Regulation

What is a regulatory gene?

A segment of DNA responsible for producing proteins that control the expression of other genes.

p.36
DNA Manipulation Enzymes

Give an example of a sticky end endonuclease.

EcoRI.

p.17
Transcription and Translation Processes

What is the function of transfer RNA (tRNA)?

To recognize specific codons on the mRNA strand and add the corresponding amino acid to the polypeptide chain during protein synthesis.

p.3
Functions of Proteins

What do myosin and actin do?

They work together to enable muscle contractions.

p.7
Nucleic Acids: DNA and RNA

What does the 1' carbon of a nucleotide attach to?

The nitrogenous base.

p.27
Enzyme Function and Mechanism

What are the characteristics of enzymes?

Enzymes are specific, not used up in reactions, can work in both directions, and can catalyze each step of metabolic pathways.

p.4
Amino Acids and Proteins

What affects the interactions between proteins?

The chemical properties of each R group.

p.27
Enzyme Function and Mechanism

How do enzymes affect the activation energy of reactions?

They lower the activation energy.

p.30
Enzyme Function and Mechanism

What may happen in theoretical scenarios where enzyme concentration continuously increases?

A point may be reached where all substrates are utilized, leading to a decrease in reaction rate.

p.31
Inhibition of Enzymes

What is allosteric inhibition?

Another term for non-competitive inhibition, where an inhibitor binds to an allosteric site.

p.33
Enzyme Function and Mechanism

What is meant by the cycling of coenzymes?

The process where coenzymes are recycled after assisting in reactions by accepting more energy.

p.16
Transcription and Translation Processes

Can mRNA be reused after translation?

Yes, it can be reused to produce more polypeptides.

p.5
Protein Structure Levels

What characterizes the secondary structure of a protein?

Formation of alpha-helices and beta-pleated sheets through hydrogen bonds between amino acids.

p.29
Factors Affecting Enzyme Activity

What occurs to enzyme activity at lower temperatures approaching the tolerance range's lower limit?

Enzyme activity slows until freezing occurs, causing reversible loss of function.

p.36
DNA Manipulation Enzymes

What is the process of cutting DNA by endonucleases called?

Restriction endonuclease digestion.

p.21
Gene Expression and Regulation

What is an operator in gene regulation?

A short region of DNA that interacts with repressor proteins to alter the transcription of an operon.

p.16
Transcription and Translation Processes

What happens during the initiation stage of translation?

The 5’ end of mRNA binds to the ribosome; the start codon (AUG) is recognized; tRNA with anticodon (UAC) delivers methionine.

p.31
Inhibition of Enzymes

Why is competitive inhibition considered 'competitive'?

Because both the substrate and inhibitor compete for binding to the active site.

p.25
Enzyme Function and Mechanism

How can the relationship between an enzyme's active site and substrate be described?

They are complementary in shape.

p.17
Enzyme Function and Mechanism

What is an enzyme?

An organic molecule, typically a protein, that catalyzes (speeds up) specific reactions.

p.16
Transcription and Translation Processes

What signals the termination of translation?

The stop codon on mRNA.

p.5
Protein Structure Levels

What is a peptide bond?

The chemical bond linking two amino acids.

p.16
Transcription and Translation Processes

What happens to the polypeptide chain after termination?

It is released by the ribosome into the cytosol or endoplasmic reticulum.

p.5
Protein Structure Levels

What are the four levels of protein structure?

Primary, Secondary, Tertiary, and Quaternary.

p.2
Functions of Proteins

What are examples of transport proteins?

Channel proteins and carrier proteins.

p.4
Amino Acids and Proteins

What type of protein is more likely to bond with other hydrophobic proteins?

Hydrophobic proteins.

p.21
Gene Expression and Regulation

What is trp operon attenuation?

A mechanism for gene regulation that stops transcription when tryptophan levels are high.

p.11
Gene Structure

What are exons?

Regions of coding DNA that are transcribed and translated into the final protein.

p.36
DNA Manipulation Enzymes

What is an endonuclease?

An enzyme that cuts strands of DNA by breaking the phosphodiester bond between nucleotides.

p.21
Gene Expression and Regulation

What is the role of a repressor protein?

It prevents gene expression by binding to its operator.

p.32
Functions of Proteins

What is the purpose of inhibition in biochemical pathways?

To prevent overproduction of products within the pathway.

p.5
Protein Structure Levels

What is a polymer?

A large molecule made up of small, repeated monomer subunits.

p.18
Gene Expression and Regulation

Where are structural genes typically located in relation to regulatory genes?

Downstream (towards the 3’ end) of the regulatory gene that controls them.

p.33
Enzyme Function and Mechanism

How do coenzymes differ from other cofactors?

Coenzymes are organic, non-protein molecules that assist enzyme function.

p.4
Amino Acids and Proteins

What are long chains of amino acids called?

Polypeptide chains or proteins.

p.37
DNA Manipulation Enzymes

What is the role of RNA polymerase?

RNA polymerase synthesizes RNA from a DNA template.

p.7
Nucleic Acids: DNA and RNA

What is the structure of DNA?

Consists of two strands of nucleotides bonded together via complementary base pairing.

p.19
Gene Expression and Regulation

What does the attenuator sequence contain?

Two consecutive trp codons.

p.11
Gene Structure

What are introns?

Regions of non-coding DNA that are removed during RNA processing.

p.11
Gene Expression and Regulation

What does the termination sequence signal?

The end of transcription.

p.29
Factors Affecting Enzyme Activity

What is denaturation in the context of enzymes?

A process that causes irreversible loss of function due to conformational changes.

p.11
Gene Structure

Are operator regions found in eukaryotic genes?

No, operator regions are typically only found in prokaryotic genes.

p.29
Factors Affecting Enzyme Activity

How does substrate concentration affect enzyme activity?

Increasing substrate concentration while keeping enzyme concentration constant increases reaction rate.

p.37
DNA Manipulation Enzymes

What are the two main types of ligases?

DNA ligase (joins DNA fragments) and RNA ligase (joins RNA fragments).

p.33
Enzyme Function and Mechanism

What is a cofactor?

A molecule that assists enzyme functioning, which can be organic or inorganic.

p.1
Protein Structure Levels

What are the four levels of protein structure?

Primary, Secondary, Tertiary, and Quaternary.

p.21
Transcription and Translation Processes

What does the antiterminator hairpin loop do during transcription?

It prevents mRNA dissociation from the template strand.

p.7
Nucleic Acids: DNA and RNA

What does the 5' carbon of a nucleotide attach to?

The phosphate group of the nucleotide.

p.4
Transcription and Translation Processes

How do amino acids join together?

At a cell's ribosomes via condensation reaction, forming peptide bonds.

p.23
Functions of Proteins

What can exocytosis eliminate from the cell?

Waste, preventing toxin build-up.

p.4
Amino Acids and Proteins

What are polymers of amino acids called?

Polypeptides or proteins.

p.5
Protein Structure Levels

What does the primary structure of a protein refer to?

The sequence of amino acids in a polypeptide chain.

p.28
Factors Affecting Enzyme Activity

What is the tolerance range for enzymes?

The wider range of conditions under which an enzyme can function effectively.

p.21
Gene Expression and Regulation

What is gene expression?

The process of reading the information stored within a gene to create a functional product, typically a protein.

p.36
DNA Manipulation Enzymes

What are restriction endonucleases?

Endonucleases that target specific recognition sites on DNA.

p.36
DNA Manipulation Enzymes

Give an example of a blunt end endonuclease.

AluI.

p.4
Amino Acids and Proteins

What is the chemical structure of an amino acid composed of?

A central carbon atom, carboxyl group, amino group, an R-group, and a hydrogen atom.

p.32
Functions of Proteins

How does the inhibition of Enzyme 1 affect the production of Substrate 3?

It reduces the availability of Substrate 2 for the subsequent reaction catalyzed by Enzyme 2, regulating the production rate of Substrate 3.

p.13
Transcription and Translation Processes

What happens during the initiation stage of transcription?

Transcription factors bind to the promoter region, and RNA polymerase binds to initiate transcription.

p.18
Gene Expression and Regulation

What types of proteins do regulatory genes produce?

Regulatory proteins such as repressor and activator proteins.

p.21
Transcription and Translation Processes

What happens to RNA polymerase during tryptophan synthesis?

It continues transcribing the structural genes for tryptophan synthesis.

p.1
Protein Structure Levels

What are the two forms of secondary protein structure?

Alpha helix and beta sheet.

p.37
DNA Manipulation Enzymes

What is the role of DNA polymerase?

DNA polymerase synthesizes a new DNA strand from nucleotides.

p.34
Inhibition of Enzymes

What distinguishes non-competitive inhibitors from competitive inhibitors?

Non-competitive inhibitors bind elsewhere and alter the structure of the active site.

p.16
Functions of Proteins

What modifications occur to polypeptide chains at the endoplasmic reticulum and Golgi apparatus?

Each polypeptide chain is folded and modified into a fully functional protein.

p.18
Gene Expression and Regulation

How does the binding of a repressor protein to the operator region affect transcription?

It inhibits transcription by preventing RNA polymerase from moving downstream.

p.5
Protein Structure Levels

What is required for a protein to function correctly?

The polypeptide chains must fold correctly into shape.

p.18
Gene Expression and Regulation

Why do different somatic cells express different genes?

Even though they are genetically identical, they produce different proteins based on their specific functions.

p.29
Factors Affecting Enzyme Activity

How does pH affect enzyme activity?

Extreme pH levels can lead to denaturation of enzymes.

p.21
Transcription and Translation Processes

What is a promoter?

The sequence of DNA to which RNA polymerase binds.

p.16
Transcription and Translation Processes

What occurs during the elongation stage of translation?

mRNA is fed through the ribosome; codons are matched to tRNA anticodons; tRNA delivers amino acids, forming peptide bonds.

p.34
Functions of Proteins

What is the difference between 'loaded' ATP and 'unloaded' ADP?

'Loaded' ATP carries three phosphate groups, while 'unloaded' ADP has two phosphate groups.

p.28
Factors Affecting Enzyme Activity

What happens to enzymes when the temperature exceeds their optimal range?

Enzymes can denature, leading to a conformational change in the active site.

p.11
Gene Expression and Regulation

What is the function of the promoter region?

It serves as a binding site for RNA polymerase to initiate transcription.

p.3
Functions of Proteins

What is a peptide hormone?

A protein signaling molecule that regulates physiological behavior.

p.13
Transcription and Translation Processes

What marks the end of transcription?

The termination sequence of a gene.

p.28
Factors Affecting Enzyme Activity

What occurs when enzyme temperature decreases below the optimal level?

Enzymes move slower, collide less frequently, and may experience little to no activity.

p.31
Inhibition of Enzymes

What is the role of the active site in competitive inhibition?

The active site is blocked by the inhibitor, preventing the substrate from binding.

p.13
Transcription and Translation Processes

How does transcription differ in prokaryotes compared to eukaryotes?

In prokaryotes, transcription occurs directly in the cytoplasm, while in eukaryotes, it occurs in the nucleus.

p.34
Functions of Proteins

What role do coenzymes play in enzyme functioning?

They assist enzyme functioning and must be recycled after undergoing a reaction.

p.21
Gene Expression and Regulation

What is a structural gene?

A segment of DNA that codes for proteins involved in the structure or function of a cell or organism.

p.36
DNA Manipulation Enzymes

What is a recognition site?

A specific target sequence of DNA where restriction endonucleases act.

p.30
Enzyme Function and Mechanism

What is the relationship between enzyme concentration and reaction rate graphically?

Reaction rate increases with increasing enzyme concentration until reaching a plateau.

p.32
Functions of Proteins

What are self-regulating pathways?

Pathways where the amount of product is controlled by the inhibition of enzymes.

p.33
Enzyme Function and Mechanism

What happens to the coenzyme during a reaction?

The coenzyme binds to the active site, donates energy or molecules, and is changed but not immediately reused.

p.2
Functions of Proteins

What is the function of transport proteins?

Control the entry and exit of substances from a cell.

p.21
Transcription and Translation Processes

Why can translation proceed in low tryptophan conditions?

There is no inhibition due to tryptophan abundance.

p.18
Gene Expression and Regulation

What do activator proteins do?

They initiate or increase the expression of structural genes.

p.2
Functions of Proteins

What is the structural function of proteins?

Support cell and tissue shape.

p.11
Gene Structure

Do prokaryotic genes contain introns?

No, prokaryotic genes do not contain introns.

p.2
Functions of Proteins

Where is elastin found?

In elastic connective tissues such as the skin.

p.2
Functions of Proteins

What is collagen?

A protein found in connective tissues such as the skin.

p.34
Factors Affecting Enzyme Activity

How does increasing substrate or enzyme concentration affect reaction rates?

It increases the reaction rate up to a certain point.

p.21
Gene Expression and Regulation

What does an activator protein do?

It increases gene expression.

Study Smarter, Not Harder
Study Smarter, Not Harder