What is an essential amino acid and why must it be obtained from dietary sources?
An essential amino acid is a standard amino acid needed for protein synthesis that must be obtained from dietary sources because the human body cannot synthesize it in adequate amounts from other substances.
What is a zwitterion in the context of amino acids?
A zwitterion is a molecule that has a positive charge on one atom and a negative charge on another atom, but which has no net charge.
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p.2
Essential Amino Acids

What is an essential amino acid and why must it be obtained from dietary sources?

An essential amino acid is a standard amino acid needed for protein synthesis that must be obtained from dietary sources because the human body cannot synthesize it in adequate amounts from other substances.

p.2
Acid-Base Properties of Amino Acids

What is a zwitterion in the context of amino acids?

A zwitterion is a molecule that has a positive charge on one atom and a negative charge on another atom, but which has no net charge.

p.7
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What is an example of a protein with quaternary structure?

Hemoglobin, which is a tetramer consisting of two identical alpha chains and two identical beta chains, each enfolding a heme group.

p.7
Protein Hydrolysis and Denaturation

Does protein denaturation affect the primary structure of a protein?

No, protein denaturation does not affect the primary structure of a protein.

p.3
Amino Acids and Their Types

What happens to amino acid groups at low pH?

At low pH, all acid groups are protonated (-COOH) and all amino groups are protonated (-N+H3).

p.3
Peptide Nomenclature

How are small peptides named according to IUPAC rules?

The C-terminal amino acid keeps its full name, while other residues end in -yl, except for specific amino acids like tryptophan and cysteine.

p.10
Immunoglobulins and the Immune Response

How do immunoglobulins bind to antigens?

Antigen binding to the variable region of an immunoglobulin occurs through hydrophobic interactions, dipole-dipole interactions, and hydrogen bonds, rather than covalent bonds.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

How do hydrogen bonds contribute to protein structure?

Hydrogen bonds are weak attractions between polar side chains containing functional groups like -OH, -NH2, and -C=O, and can be easily disrupted by changes in pH and temperature.

p.9
Protein Classification Based on Shape and Function

What color do myoglobin molecules exhibit when oxygenated and deoxygenated?

Myoglobin molecules have a red color when oxygenated and a purple color when deoxygenated.

p.9
Glycoproteins and Their Functions

What is the significance of carbohydrate groups in collagen?

The carbohydrate groups in collagen assist in cross-linking, helping to assemble collagen triple helices into more complex structures called collagen fibrils.

p.8
Protein Hydrolysis and Denaturation

What is the impact of detergents on protein structure?

Detergents affect R-group interactions.

p.8
Characteristics of Proteins

What is the structural feature of collagen?

Collagen has a triple helix structure formed when three chains of amino acids wrap around each other.

p.4
Peptides and Their Importance

What are isomeric peptides?

Isomeric peptides are peptides that contain the same amino acids but in different order, resulting in different molecules with different properties.

p.4
Protein Classification Based on Shape and Function

What is a simple protein?

A simple protein is a protein that contains only amino acid residues.

p.2
Chirality and Amino Acids

What is chirality in amino acids and which amino acid is an exception?

Chirality in amino acids refers to the presence of four different groups attached to the α-carbon atom, making them chiral, except for glycine, which is achiral.

p.3
Peptides and Their Importance

What is a dipeptide?

A dipeptide is a compound containing two amino acids.

p.2
Essential Amino Acids

What is a limiting amino acid?

A limiting amino acid is an essential amino acid that is missing, or present in inadequate amounts, in an incomplete dietary protein.

p.2
Acid-Base Properties of Amino Acids

What are the three different forms that amino acids can exist in solution?

In solution, amino acids can exist in three different forms: zwitterion, negative ion, and positive ion.

p.3
Peptides and Their Importance

What type of bond links amino acids in a peptide chain?

A peptide bond links amino acids together in a peptide chain.

p.7
Protein Hydrolysis and Denaturation

What is complete hydrolysis of a protein?

Complete hydrolysis is when all peptide bonds are broken down, freeing all constituent amino acids, resulting in amino acids as the only products.

p.1
Amino Acids and Their Types

What is an amino acid?

An amino acid is an organic compound that contains both an amino (–NH2) group and a carboxyl (–COOH) group.

p.3
Essential Amino Acids

What is the isoelectric point of alanine?

The isoelectric point of alanine is 6.01.

p.3
Amino Acids and Their Types

What occurs when cysteine is in the presence of mild oxidizing agents?

Cysteine readily dimerizes to form a cystine molecule through a covalent disulfide bond.

p.1
Characteristics of Proteins

What percentage of a cell's overall mass do proteins account for?

Proteins account for about 15% of a cell’s overall mass.

p.7
Protein Hydrolysis and Denaturation

What is the effect of alcohol on bacterial proteins?

Alcohols, such as isopropyl or ethyl alcohol, act as denaturing agents, causing denaturation of bacterial proteins.

p.10
Immunoglobulins and the Immune Response

What is the significance of immunoglobulins in relation to AIDS?

The significance of immunoglobulins is highlighted by the effects of AIDS, which disrupts normal immunoglobulin production and increases susceptibility to infections.

p.3
Amino Acids and Their Types

What is cysteine known for in terms of its side chain?

Cysteine is the only standard amino acid that has a side chain containing a sulfhydryl group.

p.7
Protein Hydrolysis and Denaturation

What is protein denaturation?

Protein denaturation is the partial or complete disorganization of a protein’s three-dimensional shape due to disruption of its structural interactions, resulting in loss of biochemical activity.

p.2
Essential Amino Acids

How many essential amino acids are there for adults and what is the additional requirement for children?

There are nine essential amino acids for adults, and a tenth one is needed for growth in children.

p.3
Peptide Bond Formation

What is the directionality of a peptide chain?

A peptide chain has directionality from the N-terminal end to the C-terminal end.

p.7
Protein Hydrolysis and Denaturation

How does cooking affect proteins?

Cooking denatures proteins, making them easier to digest and killing microorganisms.

p.1
Essential Amino Acids

What are essential amino acids?

Essential amino acids are those that cannot be synthesized adequately by the adult human body and must be obtained from dietary protein.

p.2
Acid-Base Properties of Amino Acids

What happens to amino acids at their isoelectric point?

At the isoelectric point, amino acids become insoluble due to having a net charge of zero.

p.2
Protein Classification Based on Shape and Function

What defines a complete dietary protein?

A complete dietary protein is a protein that contains all of the essential amino acids in the same relative amounts in which the body needs them.

p.3
Essential Amino Acids

What is the significance of the isoelectric point?

The isoelectric point is the pH at which an amino acid exists primarily in its zwitterion form, having no net charge.

p.1
Amino Acids and Their Types

What is the significance of the R group in α-amino acids?

The R group, or amino acid side chain, distinguishes α-amino acids from each other and varies in size, shape, charge, acidity, and chemical reactivity.

p.10
Immunoglobulins and the Immune Response

What role do immunoglobulins play in organ transplants?

Individuals receiving organ transplants must take drugs to suppress immunoglobulin production against foreign proteins in the new organ to prevent rejection.

p.5
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What is the primary structure of proteins?

The primary structure of proteins is the order in which amino acids are linked together in a protein chain, specifically the sequence of amino acids connected by peptide bonds.

p.9
Protein Classification Based on Shape and Function

What is the function of transport proteins?

Transport proteins bind and transport small biomolecules to specific locations in the body, such as hemoglobin for oxygen transport.

p.8
Protein Hydrolysis and Denaturation

How do organic solvents like ethanol and acetone affect proteins?

Organic solvents interfere with R-group interactions and hydrogen bonds, denaturing proteins in bacteria.

p.8
Characteristics of Proteins

What role does hemoglobin play in the body?

Hemoglobin transports oxygen from the lungs to tissues and can transport four oxygen molecules at the same time.

p.4
Peptides and Their Importance

How many constitutional isomers can be formed from a peptide containing one each of n different kinds of amino acids?

The number of constitutional isomers is given by n! (n factorial).

p.4
Protein Classification Based on Shape and Function

What is a conjugated protein?

A conjugated protein is a protein that has one or more non-amino acid entities present in its structure in addition to one or more peptide chains.

p.3
Peptides and Their Importance

What is an oligopeptide?

An oligopeptide refers to peptides with 10 to 20 amino acid residues.

p.1
Characteristics of Proteins

What elements are commonly found in proteins?

Proteins contain carbon, hydrogen, oxygen, and nitrogen; most also contain sulfur.

p.10
Immunoglobulins and the Immune Response

How do breastfeeding and immunoglobulins interact to protect newborns?

Breastfeeding provides immunoglobulins from the mother to the newborn, offering protection against pathogens the mother is immune to during the initial days of lactation.

p.5
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

Who was the first biochemist to determine the primary structure of a protein, and what protein was it?

The first biochemist to determine the primary structure of a protein was Frederick Sanger, and the protein was insulin.

p.9
Protein Classification Based on Shape and Function

What role do defense proteins play in the immune system?

Defense proteins, also known as immunoglobulins or antibodies, bind to foreign substances like bacteria and viruses to combat invasion.

p.8
Protein Hydrolysis and Denaturation

What is the effect of strong acids and bases on proteins?

Strong acids and bases disrupt hydrogen bonds and salt bridges, potentially leading to peptide bond hydrolysis.

p.8
Characteristics of Proteins

What is the function of myoglobin in muscles?

Myoglobin functions as an oxygen storage molecule in muscles, serving as a reserve oxygen source when demand exceeds supply from hemoglobin.

p.4
Peptides and Their Importance

What role do small peptide hormones play in the body?

Small peptide hormones give cells signals and are involved in various physiological processes.

p.4
Protein Classification Based on Shape and Function

What is the function of hemoglobin?

Hemoglobin is a hemoprotein that serves as a carrier of oxygen in the blood.

p.7
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What is the quaternary structure of proteins?

The quaternary structure is the highest level of protein organization found only in multimeric proteins, involving two or more independent peptide chains that are not covalently bonded.

p.1
Characteristics of Proteins

What distinguishes proteins from carbohydrates and lipids?

The presence of nitrogen in proteins sets them apart from carbohydrates and lipids, which most often do not contain nitrogen.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What is a beta pleated sheet structure in proteins?

A beta pleated sheet structure is a protein secondary structure where two fully extended protein chain segments are held together by hydrogen bonds, forming a repeated zigzag pattern.

p.5
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What role does insulin play in the human body?

Insulin regulates blood-glucose levels by assisting the entry of glucose into cells and facilitating the conversion of glucose to glycogen when blood-glucose levels are high.

p.9
Protein Classification Based on Shape and Function

What is the function of contractile proteins?

Contractile proteins enable movement, including muscle contraction and extension in response to nerve stimuli, with actin and myosin as key examples.

p.8
Protein Hydrolysis and Denaturation

What do reducing agents do to protein structure?

Reducing agents reduce disulfide linkages, producing -SH groups.

p.7
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What happens to a tetrameric protein under small changes in cellular conditions?

It can dissociate into dimers or separate subunits, resulting in a temporary loss of protein activity.

p.1
Amino Acids and Their Types

What characterizes nonpolar amino acids?

Nonpolar amino acids contain one amino group, one carboxyl group, and a nonpolar side chain; they are hydrophobic and found in the interior of proteins.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What characterizes unstructured segments of proteins?

Unstructured segments of proteins are neither alpha helices nor beta pleated sheets and often have the flexibility to bind to several different protein partners.

p.5
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

How is the alpha helix structure maintained?

The alpha helix structure is maintained by hydrogen bonds between C=O and N-H groups, which are oriented parallel to the helix axis.

p.9
Glycoproteins and Their Functions

What is a glycoprotein?

A glycoprotein is a protein that contains carbohydrates or carbohydrate derivatives in addition to amino acids.

p.8
Protein Classification Based on Shape and Function

What characterizes fibrous proteins?

Fibrous proteins have an elongated shape with one dimension much longer than the others and tend to have simple, regular, linear structures.

p.4
Peptides and Their Importance

What is vasopressin also known as?

Vasopressin is also known as antidiuretic hormone (ADH).

p.7
Protein Hydrolysis and Denaturation

What is the difference between complete and partial hydrolysis?

In complete hydrolysis, all peptide bonds are broken, while in partial hydrolysis, some peptide bonds are broken, producing a mixture of free amino acids and small peptides.

p.1
Amino Acids and Their Types

What type of amino acids are found in proteins?

The amino acids found in proteins are always α-amino acids.

p.10
Immunoglobulins and the Immune Response

What is the basic structure of immunoglobulin molecules?

Immunoglobulin molecules consist of four polypeptide chains: two identical heavy (H) chains and two identical light (L) chains, with constant and variable regions.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What are electrostatic interactions in proteins?

Electrostatic interactions, also known as salt bridges, involve the interaction between an acidic side chain and a basic side chain.

p.9
Protein Classification Based on Shape and Function

How does the amount of myoglobin in a muscle vary?

The amount of myoglobin present in a muscle is determined by how the muscle is used; heavily used muscles require larger amounts of myoglobin.

p.9
Protein Hydrolysis and Denaturation

What happens to collagen when boiled in water under basic conditions?

When collagen is boiled in water under basic conditions, it converts into the water-soluble protein gelatin through denaturation and hydrolysis.

p.8
Protein Hydrolysis and Denaturation

What is the effect of ultraviolet radiation on proteins?

Ultraviolet radiation operates similarly to heat, disrupting hydrogen bonds.

p.8
Characteristics of Proteins

What is alpha keratin and where is it found?

Alpha keratin is a fibrous protein found in protective coatings for organisms, such as hair, feathers, and nails.

p.7
Protein Hydrolysis and Denaturation

What is coagulation in the context of protein denaturation?

Coagulation is the precipitation out of biochemical solution of denatured protein, often resulting in loss of water solubility.

p.1
Amino Acids and Their Types

What defines polar acidic amino acids?

Polar acidic amino acids contain one amino group and two carboxyl groups, with a side chain that bears a negative charge at physiological pH.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What is the tertiary structure of proteins?

The tertiary structure of proteins is the overall three-dimensional shape that results from interactions between widely separated amino acid side chains within a peptide chain.

p.8
Protein Classification Based on Shape and Function

What is a defining feature of globular proteins?

Globular proteins have peptide chains that are folded into spherical or globular shapes and are generally water-soluble.

p.4
Peptides and Their Importance

What is the function of vasopressin in the kidneys?

Vasopressin decreases urine output to reduce water elimination from the body, especially during dehydration.

p.1
Amino Acids and Their Types

How many standard amino acids are normally found in proteins?

There are 20 standard α-amino acids normally found in proteins.

p.5
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What is the significance of the primary structure of insulin in different animals?

The primary structures of insulin in cows, pigs, sheep, and horses are very similar to each other and to human insulin, but animal insulin is considered foreign to the human body.

p.9
Protein Classification Based on Shape and Function

What are messenger proteins and their examples?

Messenger proteins transmit signals to coordinate biochemical processes among cells, tissues, and organs; examples include insulin and glucagon.

p.8
Protein Hydrolysis and Denaturation

How do salts of heavy metals affect proteins?

Salts of heavy metals combine with -SH groups to form poisonous salts.

p.4
Peptides and Their Importance

What are the two best-known peptide hormones produced by the pituitary gland?

The two best-known peptide hormones are oxytocin and vasopressin.

p.4
Protein Classification Based on Shape and Function

What role do glycoproteins play in the body?

Glycoproteins, which contain carbohydrates, serve various functions including acting as antibodies and lubricants in mucous secretions.

p.1
Amino Acids and Their Types

What are the four categories of amino acids?

The four categories are nonpolar amino acids, polar neutral amino acids, polar acidic amino acids, and polar basic amino acids.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

How do hydrogen bonds function in a beta pleated sheet?

In a beta pleated sheet, hydrogen bonds between C=O and N-H groups lie within the plane of the sheet.

p.5
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What are the two most common types of secondary protein structure?

The two most common types of secondary protein structure are the alpha helix and the beta pleated sheet.

p.9
Protein Classification Based on Shape and Function

What are structural proteins and their role?

Structural proteins provide stiffness and rigidity to tissues; collagen supports cartilage, while keratin strengthens hair and nails.

p.10
Immunoglobulins and the Immune Response

What are immunoglobulins and their primary function in the human body?

Immunoglobulins are crucial soluble proteins that function as glycoproteins produced in response to the invasion of microorganisms or foreign molecules, serving as antibodies that combat antigens.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What are the four types of interactions responsible for tertiary structure in proteins?

The four types of interactions are covalent disulfide bonds, electrostatic attractions (salt bridges), hydrogen bonds, and hydrophobic attractions.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What are disulfide bonds in the context of protein tertiary structure?

Disulfide bonds are the strongest of the tertiary structure interactions, formed by the reaction of -SH groups from two cysteine residues, creating covalent bonds either within the same chain or between different chains.

p.9
Protein Classification Based on Shape and Function

What is the role of myoglobin in muscle contraction?

Myoglobin serves as the oxygen storage protein that provides molecular oxygen necessary for muscle contraction.

p.6
Protein Structure: Primary, Secondary, Tertiary, and Quaternary

What are hydrophobic interactions in proteins?

Hydrophobic interactions are attractions between nonpolar side chains due to London forces.

p.9
Protein Classification Based on Shape and Function

What are catalytic proteins and their function?

Catalytic proteins, or enzymes, facilitate biochemical reactions and play a critical role in genetics and metabolic processes.

p.8
Protein Hydrolysis and Denaturation

What happens to proteins when subjected to violent whipping or shaking?

Violent whipping or shaking stretches and entangles molecules in globular shapes.

p.4
Protein Classification Based on Shape and Function

What distinguishes a monomeric protein from a multimeric protein?

A monomeric protein has only one peptide chain, while a multimeric protein has more than one peptide chain.

p.9
Glycoproteins and Their Functions

How does collagen qualify as a glycoprotein?

Collagen qualifies as a glycoprotein due to the presence of carbohydrate units in its structure.

p.8
Protein Hydrolysis and Denaturation

What is the mode of action of heat as a denaturing agent for proteins?

Heat disrupts hydrogen bonds, causing molecules to vibrate excessively and produces coagulation.

p.4
Peptides and Their Importance

What are enkephalins?

Enkephalins are pentapeptide neurotransmitters produced by the brain that bind to receptor sites to reduce pain.

p.8
Protein Hydrolysis and Denaturation

How does microwave radiation affect protein structure?

Microwave radiation causes violent molecular vibrations that disrupt hydrogen bonds.

p.8
Protein Classification Based on Shape and Function

How do membrane proteins differ from globular proteins?

Membrane proteins are associated with a membrane system of a cell, tend to be water-insoluble, and usually have fewer hydrophobic amino acids than globular proteins.

p.4
Peptides and Their Importance

What is the physiological importance of glutathione?

Glutathione functions as an antioxidant, protecting cellular contents from oxidizing agents.

p.8
Protein Classification Based on Shape and Function

What are the three main types of proteins based on molecular shape?

The three main types of proteins are fibrous, globular, and membrane proteins.

p.4
Peptides and Their Importance

What is the primary function of oxytocin?

Oxytocin regulates uterine contractions and lactation, stimulating the flow of milk in nursing mothers.

p.4
Protein Classification Based on Shape and Function

How is a protein defined in terms of its structure?

A protein is defined as a naturally occurring, unbranched polymer in which the monomer units are amino acids, containing at least 40 amino acid residues.

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